GenePalette

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GenePalette Ranking & Summary

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  • Rating:
  • License:
  • Freeware
  • Publisher Name:
  • The Regents of the University of California
  • Publisher web site:
  • http://radsite.lbl.gov/radiance/framew.html
  • Operating Systems:
  • Mac OS X
  • File Size:
  • 707 KB

GenePalette Tags


GenePalette Description

Enables you to easily analyze gene organization and the intron/exon structure GenePalette is a powerful cross-platform and cross-species desktop application for genome sequence visualization and navigation. Users can download from NCBI's GenBank database large or small segments of genome sequence from a variety of organisms (e.g., yeast, human, fly, worm, mouse, plants), preserving the gene annotation that is associated with that sequence.Sequence elements of interest (transcription factor binding sites, other regulatory motifs, restriction enzyme sites, primer sequences, SNPs, microsatellites, etc.) can be searched for and identified in the loaded sequence, after this, they can be clearly visualized with a colorful graphical representation of all gene organization and the structure intron/exon. Requirements: · Java What's New in This Release: · Fixed GenBank retrieval / Updated genome collections · Added a running counter of how much sequence is selected when dragging out a box in the Graphical View · Select/Deselect All button added to the Feature Deletion Dialog · When searching GenBank, if the first word of your query is found in the gene list, that box is checked in addition to the row being highlighted · Fixed a bug related to trimming within introns · Fixed some error messages to be more descriptive · New Icons(Mac), Splash Page, and Logo


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