Bio::Phylo Phylogenetic analysis using Perl
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Bio::Phylo Tags

analysis Perl module perl phylogenetic analysis phylogenetic

Bio::Phylo Description

Phylogenetic analysis using Perl Bio::Phylo is a Perl module for the Bio::Phylo package for phylogenetic analysis using object-oriented perl5. In this file, methods are defined that are performed by other objects in the Bio::Phylo release that inherit from this base class (which you normally wouldn't use directly).For general information on how to use Bio::Phylo, consult the manual (Bio::Phylo::Manual).If you come here because you are trying to debug a problem you run into in using Bio::Phylo, you may be interested in the "exceptions" system as discussed in Bio::Phylo::Util::Exceptions. In addition, you may find the logging system in Bio::Phylo::Util::Logger of use to localize problems.SYNOPSIS # Actually, you would almost never use this module directly. This is # the base class for other modules. use Bio::Phylo; # sets global verbosity to 'error' Bio::Phylo->VERBOSE( -level => Bio::Phylo::Util::Logger::ERROR ); # sets verbosity for forest ojects to 'debug' Bio::Phylo->VERBOSE( -level => Bio::Phylo::Util::Logger::DEBUG, -class => 'Bio::Phylo::Forest' ); # prints version, including SVN revision number print Bio::Phylo->VERSION; # prints suggested citation print Bio::Phylo->CITATION; Requirements: · Perl

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