GPS Study protein-DNA interaction using ChIP-Seq data.
Download

GPS Ranking & Summary

GPS Tags

interaction chip DNA Genome chip controller control chip chip test seq ADC Chip control converter chip view DNA data display DNA data DNA data DNA Fingerprint Data computer chip catalogue computer chip database RNA-seq data analysis analyze RNA-Seq data data interaction ChIP-seq analysis monitor chip convert DNA data protein data conversion protein-coding DNA sequence Brookhaven Protein Data Bank Protein Data Bank analysis Chip-8 Emulator Emulate Chip-8 CHIP-8 view DNA methylation data Chip-on-chip array data Chip-on-chip analysis Chip-on-chip Genome Positioning System DNA Interaction Protein Interaction chip's challenge

GPS Description

The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms, including Mac OS X, Windows, Unix and Linux. GPS is multi-threaded, allowing users to take advantage of multi-core CPU. It has been published on Bioinformatics. 2010 Oct 21. . PMID: 20966006. Get GPS and take it for a spin to see what it can actually do for you! Main features: Achieve high spatial resolution on predicting binding events Resolve closely spaced (less than 500bp) events that appear as a single cluster of reads Process multiple dataset simultaneously to align common events across distinct experiments

GPS Related Software