fastsimcoal Fast sequential Markov coalescent simulation of genomic data.
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fastsimcoal Tags

analysis Analyze simulate sequential sequential Gaussian simulation genomic region methylation genomic methylation data simulation Markov chain simulator interpret markov algorithm view genomic information analyze genomic information genomic information viewer view genomic data genomic data viewer explore genomic data sequential programming coalescent modeler particle simulation data Coalescent simulation mammalian genomic sequence coalescent analysis genomic simulator genomic simulation genomic proteomics data simulation access genomic diversity calculate Markov matrices Markov matrices calculator Markov coalescent simulation genomic data simulation analyze genomic data genomic structural variation Genomic Loci Genomic Annotator

fastsimcoal Description

fastsimcoal is a small, simple, command prompt based application specially designed to help you efficiently generate genetic diversity for different types of markers along large genomic regions, for both present or ancient samples. It includes a parameter sampler allowing its integration into Bayesian or likelihood parameter estimation procedure. fastsimcoal can handle very complex evolutionary scenarios including an arbitrary migration matrix between samples, historical events allowing for population resize, population fusion and fission, admixture events, changes in migration matrix, or changes in population growth rates. The time of sampling can be specified independently for each sample, allowing for serial sampling in the same or in different populations.

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