Squint Alignment Editor Molecular alignment tool for you to use
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Align align sequence sequence alignment alignment editor

Squint Alignment Editor Description

Squint is a Java-based, advanced alignment tool. The program was made in order to bring together algorithmic alignment of molecular sequences. The software is an extension of the alignment editor available in Pebble. Main features: Import/export sequence/alignment data in a number of formates (Fasta/Nexus/Clustal/Phylip). Edit the placement of the gaps in an alignment, with the option of two views of the data being edited (with one view showing the data as DNA, the other as amino acid for example). Dynamic feedback on the effect of changes to the alignment on one or more measures of alignment score. Realign either all the sequences, or just a selected area of the total alignment. Perform alignments based on a format different from that of sequences, and have the results mapped back to the original data. For example, align a nucleotide sequence by amino acid or codon.

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