SimPlot Recombination analysis made easy.
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SimPlot Ranking & Summary

SimPlot Tags

analyzer analysis Analyze sequence analysis Intracodon Recombination Recombination recombination rate meiotic recombination hotspot recombination recombination analysis

SimPlot Description

SimPlot is a small, easy to use application specially designed to help you perform a recombination analysis. This application allows identification of a Query, generally the a sequence you suspect is mosaic, and the rest of the sequences are Reference sequences (or can be ignored - see the Select Function). The graph that is generated is a set of lines (or optionally strings of points) that reflect the similarity (or distance) of each Reference sequence (or group) to the Query. In order to generate this plot a sliding window is passed across the alignment in small steps (the window size and step size are selectable).

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