Recco

Analyze sequence alignments with this application.
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Recco Ranking & Summary

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  • Rating:
  • License:
  • Freeware
  • Publisher Name:
  • Max-Planck Institute for Informatics
  • Operating Systems:
  • Windows All
  • File Size:
  • 1.5 MB

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Recco Description

Recco is a handy, easy to use, Java based tool specially designed to help you analyze alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. Also the analysis is based on explaining one sequence with all other sequences in the alignment using mutation and recombination. A parametric analysis of the parameter alpha, which weights recombination cost against mutation cost, yields additional information as to which sequence might be recombinant.


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