IMAS View and analyze genomic information with the help of this application.
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IMAS Tags

analyzer analysis display analyze information genomic region methylation genomic methylation view genomic information analyze genomic information genomic information viewer view genomic data genomic data viewer explore genomic data mammalian genomic sequence genomic simulator genomic simulation genomic access genomic diversity genomic data simulation analyze genomic data genomic structural variation Genomic Loci Genomic Annotator

IMAS Description

IMAS or The Interactive Multigenomic Analysis System is a new visual analytics system specially designed for the discovery of knowledge in genomic information. IMAS enables genomic scientists to rapidly analyze a set of microbial genomic sequences using tools such as Glimmer, Blast, ClustalW, Primer3 and TransTerm and to visualize the output of these tools in a unified genomic framework. IMAS provides the user with a 1-dimensional zooming graphical interface to a genomic sequence. The user can interact with the sequence to analyze for the presence of coding regions, which can be further analyzed by sequence alignment with local and remote databases using Blast. Blast results are displayed in a unified graphical framework that allows the user to filter and to select Blast hits of interest. Selected Blast hits can be then multialigned using ClustalW, and these multialignments are displayed using the common graphical framework. Multialignments and pairwise alignments can be annotated by the user for future reference, and HTML reports can be generated showing these findings. Main features: Zoomable User Interface -- Fast! Runs analysis programs locally (Blast, Glimmer, Clustal...) IMAS Blast can search NCBI nr database Runs HMMPfam on local copy of Pfam data Can create Blast DBs from INSDSeq XML files

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