FASTML A program for computing the ancestral amino-acid sequences of a phylogenetic tree
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FASTML Ranking & Summary

FASTML Tags

sequence acid phylogenetic tree viewer view phylogenetic tree phylogenetic tree sequence find amino acid amino acid finder search amino acid Amino Acid analyzer amino acid sequence amino acid amino acid translator estimate phylogenetic tree phylogenetic tree analyze phylogenetic tree extract amino acid phylogenetic amino acid residue optimal amino acid ancestral gene cluster ancestral gene phylogenetic tree editor create phylogenetic tree phylogenetic tree generator edit phylogenetic tree build phylogenetic tree phylogenetic tree estimation analyze amino acid nucleic acid analyze amino acids pair amino acids pair analysis phylogenetic tree analyzer display phylogenetic tree amino acid sequence analysis analyze amino acid sequence Annotated phylogenetic tree amino acid classification Amino Acid Topology recognize sequence amino-acid detector detect amino-acid analyze amino acid chain ancestral

FASTML Description

FASTML was developed to be a program for computing the ancestral amino-acid sequences of a phylogenetic tree. Usage: FASTML uses flags in the command line arguments: -For help, type "fastml.exe -h" -s seq.aln = the sequence input file name. -t tree.txt = the input tree file name (Newick format). The program automatically recognize any of these sequence formats: Phylip, Molphy, Fasta, Mase, Clustal, or Nexus. Use the -m option to choose a model. The following models are supported (for amino-acids): DAY, JTT, REV, CPREV, WAG, JC. For nucleotides, currently only the JC model is supported. The default model is the JTT.

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