DecGPU Correction algorithm for your GPU
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DecGPU Description

DecGPU, also known as the Distributed Error correction on GPUs is a parallel and distributed error correction algorithm for short reads produced by next-generation sequencing technology. The algorithm is implemented using CUDA C++ and MPI and can run on a GPU or CPU cluster. The parallel and distributed feature of this algorithm make it feasible and flexible to overcome challenges from computational overhead and memory constraint for large-scale high-throughput short read datasets. This algorithm has been tested on a Telsa S1070 cluster with OpenMPI and MVAPICH2 libraries.

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