CleanCollapse Sequence alignment made easy.
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CleanCollapse Ranking & Summary

CleanCollapse Tags

Align align sequence sequence rythmic sequence text alignment column alignment HLA sequence biosystem sequence write alignment formats alignment create alignment document alignment CRLF sequence analyze sequence alignment sequence alignment analyzer view sequence alignment multiple sequence alignment alignment visualizeation manipulate alignment alignment manipulation create sequence alignment sequence alignment creator make sequence alignment sequence alignment data DNA alignment cromatrogram sequence global sequence alignment Sequence alignment viewer Sequence alignment sequence alignment algorithm alignment accuracy aliquot sequence Protein Alignment mammalian genomic sequence multiple alignment alignment editor aligh sequence Alignment Method cDNA sequence rank structure alignment Smith-Waterman alignment display alignment spliced alignment DNA sequence alignment sequence to haplotype pairwise alignment analysis analyze pairwise alignment view alignment file display alignment file sequence alignment analysis find alignment gap locate alignment gap protein sequences alignment alingment sequence-structure alignment alignment analysis NCBI BLAST alignment protein sequence alignment page alignment

CleanCollapse Description

CleanCollapse is a handy, easy to use application designed to accept an alignment of sequences, and optionally can remove rare sporadic polymorphisms that may represent analytical artifacts, and also reduce redundancy by "collapsing" identical sequences into a single sequence. The program provides a record of these manipulation, and some rudimentary analysis (e.g. proportion of synonymous and nonsynonymous sporadic changes) that may assist interpretation.

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