BlastAlign Will align nucleotide sequences
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BlastAlign Ranking & Summary

BlastAlign Tags

Align Text Align align sequence sequence movie sequences video sequences align object align to canvas nucleotide proportion object align Text align align photo nucleotide sequence nucleotide sequence manager nucleotide match sequences Align Control Align Content align parallel data behavioral sequences matrix representation aligh sequence aligh align peptide nucleotide substitution model nucleotide motif nucleotide substitution nucleotide annotation nucleotide alignments align protein sequences align protein analyze polypeptide sequences polypeptide sequences nucleotide polymorphisms analyze metagenomic sequences nucleotide mutation nucleotide fraction sequences

BlastAlign Description

The BlastAlign application uses NCBI Blast to align nucleotide sequences that have large indels (INsertions / DELetions) or are otherwise difficult to align globally. The program selects the most representative sequence from the input sequences and then extracts the blast query anchored multiple alignment (in NEXUS and Phylip formats). Alternatively, the user can choose which sequence to use as an anchor. The program also outputs a matrix representing regions of homology along the sequences, which can be used to visually identify subgroups sharing particular large indels. An additional program, BlastAlignP uses tblastn to align nucleotide sequences to a single amino acid reference sequence, allowing an open reading frame to be maintained in the multiple alignment.

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