SRMA A free and open source re-aligner for high throughput sequencing data
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sequence algorithm align sequencing data data re-aligner re-align data

SRMA Description

A free and open source re-aligner for high throughput sequencing data SRMA is a free and open source, post-alignment micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed indels. SRMA performs a re-alignment of each read to a graphical representation of all alignments within a local region to provide a better overall base-resolution consensus. Requirements: · Java

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