MDAnalysis Framework to analyze molecular dynamics trajectories
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MDAnalysis Description

Framework to analyze molecular dynamics trajectories MDAnalysis is a free and open source Python framework built to analyze molecular dynamics trajectories generated by Charmm, NAMD, or LAMMPS.MDAnalysis allows one to read molecular dynamics trajectories and access the atomic coordinates through numpy arrays. This provides an extremely flexible and relatively fast framework for complex analysis tasks. In addition, Charmm-style atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. Requirements: · Python What's New in This Release: · Updated docs and added examples; minor fixes over r136.

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