AssociationViewer

Easily view SNPs in a generic context
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AssociationViewer Ranking & Summary

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  • Rating:
  • License:
  • GPL
  • Price:
  • FREE
  • Publisher Name:
  • Olivier Martin
  • Publisher web site:
  • Operating Systems:
  • Mac OS X
  • File Size:
  • 4.1 MB

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AssociationViewer Description

Easily view SNPs in a generic context AssociationViewer is a free and open source Java application used to display SNPs in a genetic context.Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. Here are some key features of "AssociationViewer": · Display SNPs and their p-values in a genetic context, similar to usual genome browsers · Automatically download supplementary information from Ensembl/Biomart · Display Hapmap LD plots (currently coming from CEU population) · Create reports (made of one or several regions of interest), which can be reloaded later · Print and export the display to various data formats · Import external data file such as BED or Wiggle as supplementary tracks · Does not require to have a local copy of any data or data source, except for the primary file of SNPs and their respective p-values · Users can scroll and browse through their data in real time · Small in size (AssociationViewer itself is less than 500 KB, less than 5 MB with the required libraries) · Downloaded data is kept in a cache locally for faster access · Due to the cache, memory requirement is reasonable and should be constant over time (from the moment SNPs are loaded to the moment the application is closed) Requirements: · Java 1.6 · A minimum of 1024 x 768 screen resolution · A working Internet connection · 256 MB RAM What's New in This Release: bugs fixed: · 2816294 : potential bug when checking external data sources. · 2816154 : bug concerning recent Hapmap changes. features implemented: · 2728254 : new format (XML) supported for time series, see AssociationViewer PDF documentation for specifications. · 2590069 : empty tracks (no data on the selected chromosome) are not displayed. · 2378292 : new library (FreeHEP) brings new export features for both bitmap and vector formats. · 1969368 : this is linked to the previous new feature. Vector formats can be used to increase export resolution.


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