mkESA

Enhanced suffix array construction tool
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mkESA Ranking & Summary

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  • Rating:
  • License:
  • GPL
  • Price:
  • FREE
  • Publisher Name:
  • mkESA Team
  • Publisher web site:
  • http://bibiserv.techfak.uni-bielefeld.de/mkesa/
  • Operating Systems:
  • Mac OS X
  • File Size:
  • 295 KB

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mkESA Description

Enhanced suffix array construction tool mkESA is an open source and free program for constructing enhanced suffix arrays (ESAs) from biological sequence data. The program is based on the implementation of Manzini's lightweight Deep-Shallow algorithm, which can also utilize multiple CPUs/cores for some extra speed-up. The generated output is compatible to the output of mkvtree from the Vmatch package written by Stefan Kurtz.


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