USeq A suite of applications for analyzing next generation sequencing data
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analyze analyzer analyze sequencing data sequencing data analyzer FDR estimation sequencing data

USeq Description

A suite of applications for analyzing next generation sequencing data USeq is a suite that contains applications for analyzing next generation, ultra high throughput signature sequencing data from Solexa/ Illumina, SOLiD, and 454 platforms. Initial emphasis: ChIP-Seq and mRNA-Seq with FDR estimations. Requirements: · Java · R with Storey's Q-Value library What's New in This Release: · Officially added the GUI. · Added a new application for merging two microarray designs (FilterIntersectingRegions). Modified Alleler output for generating bed files from INDELS.

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