SPDBV UI designed to analyze several proteins at the same time
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analyze protein structure analyze protein protein analyzer view protein

SPDBV Description

UI designed to analyze several proteins at the same time Swiss-PdbViewer (SPDBV), aka DeepView, is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) in collaboration between GlaxoSmithKline R&D and the Structural Bioinformatics Group at the Biozentrum in Basel.Working with these two programs greatly reduces the amount of work necessary to generate models, as it is possible to thread a protein primary sequence onto a 3D template and get an immediate feedback of how well the threaded protein will be accepted by the reference structure before submitting a request to build missing loops and refine sidechain packing.Swiss-PdbViewer is also able to read electron density maps, and offers various tools to build into the density. In addition, several modeling tools are included and command files for popular energy minimization packages can be generated. What's New in This Release: · The Thymine C6 atom is now correctly loaded. · Fixed the POV-Ray output endless loop on the PC version. · The occasional crash while saving PDB files (such as 2i37) on the PC has been fixed. · Updated the address of the Uppsala Electron Density Map Server.

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