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Recco Ranking & Summary
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- License:
- Freeware
- Publisher Name:
- Max-Planck-Institut Informatik
- Publisher web site:
- http://methmarker.mpi-inf.mpg.de/
- Operating Systems:
- Mac OS X
- File Size:
- 1.6 MB
Recco Tags
Recco Description
Analyzes alignments of sequences that evolved subject to recombination and mutation Recco is a free program that analyzes alignments of sequences that evolved subject to recombination and mutation. The analysis provides evidence as to whether a dataset contains recombination, which sequence is a recombinant and where the recombination breakpoints are. The analysis is based on explaining one sequence with all other sequences in the alignment using mutation and recombination. A parametric analysis of the parameter alpha, which weights recombination cost against mutation cost, yields additional information as to which sequence might be recombinant.NOTE: Recco is free for non-commercial use. Requirements: · Java 1.5 or later What's New in This Release: · several minor bugs fixed (involving GUI repainting, command line processing among others) · "View => Optimal Solution Only" shows the optimal solutions only · "Opt Seqsel" button removes sequences from the alignment such that evidence for recombination for the currently selected sequence is maximized · command line changed: more options, slightly different syntax, command line description now correct. · selection of an amino-acid model from the menu now works
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