MASQOT-GUI free download, MASQOT-GUI download on software download

Free and open source spot quality control application MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. MASQOT-GUI includes segmentation, quantification, gridding, quality assessment and data visualization.MASQOT-GUI hosts three independent applications (MASQOTGrid, MASQOTSeg and MASQOTView) for this purpose with interactions between the tools as well as import and export support for external software.MASQOTGrid is an application for gridding (addressing) of two-channel microarray data.MASQOTSeg is an application for segmentation of microarray spots featuring integrated multivariate spot quality control assessment. The program uses spot locations (from MASQOTGrid or from other gridding applications) and outputs a set of common spot properties along with the MASQOT quality score. MASQOTView is an application for viewing and re-flagging microarray spots. Selected spots, filtered based on the MASQOT quality control score, will be cropped and scaled and can subsequently be visually inspected. Requirements: · Java What's New in This Release: · MASQOT-GUI: Added reference to the Bioinformatics applications note publication. · MASOQTView: Spot sort order is now 'QC' by default. · MASQOTView: The 'remove from list' button does no longer leave selected entries due to a previous implementation error. · MASQOTView: Dimensions of the information window (when center-button clicking a spot) has been increased slightly. · MASQOTSeg: The 'overall progress' indicator has been fixed. · MASQOTSeg: Width of processing dialog is now determined by the width of the main window. · MASQOTSeg: The 'remove from list' button does no longer leave selected entries due to a previous implementation error. · MASQOTSeg: The list of generated files has been corrected (no longer contains only the generated files from the last of the processed grids in the list). · MASQOTSeg: Now possible to ignore background (BG) related issues by checking the 'ignore BG contaminants' checkbox.

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