FSA Free, open source and fast statistical alignment
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FSA Tags

alignment align dna dna alignment rna alignment protein alignment

FSA Description

Free, open source and fast statistical alignment FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning DNA, RNA or homologous protein sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple alignment only by using pairwise estimations of homology. What's New in This Release: · Handle "NA" fields in Mercator maps (Robert Bradley) · Bugfix for automatic available RAM detection for some Linux distributions (Colin Dewey) · Parallelization and database modes are disabled by default (Colin Dewey) · Bugfix for strange behavior where all sequences are left unaligned under some older compilers (Colin Dewey)

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