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Integrative database around plant genomes FLAGdb++ is a free plant genome viewer written in the Java programming language.The genomes of the model plants are used as physical references to gather and merge all the generated information and therefore to optimize functional predictions. Indeed, the biological interpretation of large quantities of data requires their integration, organization and visual representation. Organizing the data around the chromosome sequences allows one to reduce the redundancy of the information and references, but also to easily study the concepts of synteny and genome evolution and the relationships between the structure and the function of the genes. It is only with this general overview that the functional study of genes and the orthology quest will be possible, taking into account patterns of regulation and roles and relationships of genes in particular physiological states. Therefore, the ultimate objective of this project is to develop a database and associated bioinformatics tools based on the integration of genomic data around a selection of plant complete genomes. Requirements: · Java 1.4 or later What's New in This Release: · Update of Arabidopsis and Rice genomes and their annotation · Integration of Vitis 12x genome and annotation · Eugene annotation of the Vitis genome · Integration of phylogenetic profiles · New Arabidopsis FST and GST · Update of all the transcript resources (EST and cDNA) · Integration of predicted Arabidopsis smallRNA · New tools and interfaces dedicated to orthology relationships · Update of subcellular localization, gene family classification and cross references

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