CodonCode Aligner

A great application for sequence assembly, contig editing and mutation detection
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CodonCode Aligner Ranking & Summary

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  • Rating:
  • License:
  • Trial
  • Price:
  • USD 960.00 | BUY the full version
  • Publisher Name:
  • CodonCode Corporation
  • Publisher web site:
  • http://www.codoncode.com/index.htm
  • Operating Systems:
  • Mac OS X 10.3.4 or later
  • File Size:
  • 21.1 MB

CodonCode Aligner Tags


CodonCode Aligner Description

A great application for sequence assembly, contig editing and mutation detection CodonCode Aligner is a program for sequence assembly, contig editing, and mutation detection, available for Windows and Mac OS X. Aligner is compatible with Phred-Phrap and fully supports sequence quality scores, while offering a familiar, easy-to-learn user interface.CodonCode Aligner lets you take full advantage of modern algorithms for base calling and sequence assembly, without forcing you to learn complicated command line options or Perl programming. Here are some key features of "CodonCode Aligner": · Import sequences from text files. · Import sequences from ABI and SCF files. · End clip. · Vector trim. · Assemble contigs. · Align to a reference sequence. · Align contigs to each other while keeping the links to the traces. · Assemble or align in groups, based on sample names. · Find heterozygous mutations. · Analyze heterozygous insertions and deletions. · Define regions of interest ("features"), for example low quality consensus regions. · Quickly navigate between user-defined features. · Import and edit Phrap-generated assemblies. · Run Phred and Phrap directly from Aligner projects. · You also have the possibility to export features and sequences. · Export Consed-compatible assembly projects. Limitations: · 30 days trial period. · You can use in your projects only unassembled samples. · Also, you cannot save, export, or print from projects that contain contigs, or after you tried any of the restricted functions (Aligner will warn you first). What's New in This Release: · Amino acid translation for all samples. · Protein translation based background colors. · Difference tables. · Import directly from GenBank. · Script menu. · New script commands. · Import 454 data (SFF files). · Create new text sequences. · Support larger projects. · Faster assemblies. · Automatic memory use on Windows. · Improved pen tablet support.


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