 | BndLstBndLst - List connectivity information for atoms in a PDB file |
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BndLst Ranking & Summary
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- License:
- Freeware
- Price:
- FREE
- Publisher Name:
- Mike Word
- Publisher web site:
- http://kinemage.biochem.duke.edu/software/kincon.php
- Operating Systems:
- Mac OS X
- File Size:
- 34 KB
BndLst Tags
BndLst Description
BndLst - List connectivity information for atoms in a PDB file BndLst is a free app that will list connectivity information for atoms in a PDB file.Bndlst reads a PDB format file and for each atom prints a list of covalent and H-bonded neighboring atoms, along with several atomic properties. A record is output for each atom, followed by a record for each atom it is connected to, terminating in an EOL record signaling the end of the list.By default, only the H-bonds and covalent nearest bonded neighbors are listed. Alternatively, by using the -neighbors, -rad# and -cut# it is possible to show non-bonded non-hbonds, and not show close bonded atoms.BndLst can prove very useful when one has to build scripts which process atomic structures.
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