BEDTools A suite of utilities for comparing genomic features in BED format
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compare comparison feature compare features feature comparison intersect bed file

BEDTools Description

A suite of utilities for comparing genomic features in BED format BEDTools is a suite of utilities for comparing genomic features in BED format. These utilities allow one to quickly address tasks such as: Intersecting two BED files. Merge overlapping features. Paired-end overlaps. What's New in This Release: · Sped up the file parsing. ~10-20% increase in speed. · Created reportBed() as a common method in the bedFile class. · Cleans up the code quite nicely. · Added the ability to compare BED files accounting for strandedness. · Paired-end intersect. · Fixed bug that prevented overlaps from being reported when the overlap fraction requested is 1.0

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