EBI-FGPT-FuzzyRecogniserParses ontology file's constructor | |
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EBI-FGPT-FuzzyRecogniser Ranking & Summary
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- License:
- Perl Artistic License
- Price:
- FREE
- Publisher Name:
- Emma Hastings
- Publisher web site:
- http://search.cpan.org/~ehastings/
EBI-FGPT-FuzzyRecogniser Tags
EBI-FGPT-FuzzyRecogniser Description
EBI::FGPT::FuzzyRecogniser is a Perl module that takes in the constructor an ontology file (OWL/OBO/OMIM/MeSH) and parses it into an internal table of ontology terms (type of EBI::FGPT::FuzzyRecogniser::OntologyTerm). The module contains the find_match method which finds the best match for the supplied term in the given ontology. This can be then queried for ->match_similarity(), ->matched_value(), ->matched_label(), and ->matched_accession(). The best match is based on the n-grams similarity metric.SYNOPSIS use EBI::FGPT::FuzzyRecogniser; # instantiate and pass ontology file my $fuzzy = EBI::FGPT::FuzzyRecogniser->new( obofile => 'obo.txt' ); # call find_match on a supplied term # finds the best match for the supplied term in the ontology. my $x = $fuzzy->find_match('submitter');Product's homepage
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