Bio::SeqIO::fasta Bio::SeqIO::fasta is a Perl module with fasta sequence input/output stream.
Download

Bio::SeqIO::fasta Ranking & Summary

Bio::SeqIO::fasta Tags

Perl module sequence fasta sequence fasta bioperl output stream

Bio::SeqIO::fasta Description

Bio::SeqIO::fasta is a Perl module with fasta sequence input/output stream. Bio::SeqIO::fasta is a Perl module with fasta sequence input/output stream.APPENDIXThe rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_seq Title : next_seq Usage : $seq = $stream->next_seq() Function: returns the next sequence in the stream Returns : Bio::Seq object Args : NONEwrite_seq Title : write_seq Usage : $stream->write_seq(@seq) Function: writes the $seq object into the stream Returns : 1 for success and 0 for error Args : array of 1 to n Bio::PrimarySeqI objectswidth Title : width Usage : $obj->width($newval) Function: Get/Set the line width for FASTA output Returns : value of width Args : newvalue (optional)preferred_id_type Title : preferred_id_type Usage : $obj->preferred_id_type('accession') Function: Get/Set the preferred type of identifier to use in the ">ID" position for FASTA output. Returns : string, one of values defined in @Bio::SeqIO::fasta::SEQ_ID_TYPES. Default = $Bio::SeqIO::fasta::DEFAULT_SEQ_ID_TYPE ('display'). Args : string when setting. This must be one of values defined in @Bio::SeqIO::fasta::SEQ_ID_TYPES. Allowable values: accession, accession.version, display, primary Throws : fatal exception if the supplied id type is not in @SEQ_ID_TYPES. Requirements: · Perl

Bio::SeqIO::fasta Related Software