MQ2 Aims at extracting and find QTLs from MapQTL output
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Python library Python

MQ2 Description

MQ2 simple Python module to process output from MapQTL analysis.Assuming one QTL per linkage group and using the LOD threshold set by the user. This application extracts all the QTLs detected by MapQTL, using the JoinMap map file, it finds the closest marker and finally put the number of QTLs found for each marker on the map.This approach quickly allows you to find potential QTL hotspot in your dataset. This is particularly usefull for large QTL analysis on a large number of traits.Install the project:There are two ways to install this project:From the sources- clone the sourcegit clone https://github.com/PBR/MQ2.git- Enter the folder and run the setup.py scriptcd MQ2sudo python setup.py installFrom pypi- Download and install the project from pypieasy_install MQ2Run the project:To run the project, simply run the MQ2 script provided.See MQ2 --help or MQ2 -h for the different argument available.Testing:This project contains unit-tests allowing you to check if the code behaves as it should.To run them, two ways, either:nosetestsfrom the MQ2 folder, or:python test.pywithin the test folderProduct's homepage

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