 | E-Cell SystemA modelling and simulation software environment. |
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E-Cell System Ranking & Summary
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E-Cell System Description
A modelling and simulation software environment. E-Cell System is a concept of constructing virtual cells on computers.E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells, architected by Kouichi Takahashi and written by a wonderful team of developers. Core part of the system, E-Cell Simulation Environment version 3, allows many components driven by multiple algorithms with different timescales to coexist.E-Cell Project is an international research project aiming at developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation.E-Cell System consists of the following three major parts:- E-Cell Simulation Environment (or E-Cell SE)- E-Cell Modeling Environment (or E-Cell ME)- E-Cell Analysis Toolkit Here are some key features of "E-Cell System": Basic capabilities: · Object-oriented modeling and simulation of complex systems. · Plug-in architecture. New user-object classes can be developed, dynamically loaded, and used in simulation. · Real-time user interaction and visualization during the simulation. Scripting: · Python scripting of a simulation session (run/stop/parameter manipulation/data processing etc...). · Python scripting of a simulation experiment that involves many runs of the simulation sessions (such as parameter tuning, metabolic control analysis etc..) · Python scripting of model file generation (e.g. for automated model construction from databases). Compatibilities: · SBML level 1/2 importing. · SBML level 1/2 exporting. Parallel computation: · Shared-memory, multi-thread parallelization of a single simulation session. (to be merged into the main branch.) · Cluster and grid distributed computation of multiple simulation sessions. Sun Grid Engine, (Globus toolkit). What's New in This Release: · Fixed a bug in ecell.Session.saveLoggerData(). (Moriyoshi) · Fixed a bug in ecell.ECDDataFile. (Moriyoshi)
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