Bio::Tools::Run::AbstractRunner

Bio::Tools::Run::AbstractRunner is a Perl module.
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Bio::Tools::Run::AbstractRunner Ranking & Summary

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  • Rating:
  • License:
  • Perl Artistic License
  • Price:
  • FREE
  • Publisher Name:
  • Juguang Xiao
  • Publisher web site:
  • http://search.cpan.org/~sendu/bioperl-run-1.5.2_100/Bio/Tools/Run/AbstractRunner.pm

Bio::Tools::Run::AbstractRunner Tags


Bio::Tools::Run::AbstractRunner Description

Bio::Tools::Run::AbstractRunner is a Perl module. Bio::Tools::Run::AbstractRunner is a Perl module. The problems of bioperl-run wrapper before the time this module is made are:· There are a lot of duplicate code among bioperl-run modules· It seems only to support object-in-object-out process, while sometimes people just need file-in-file-out one, which has been actually implemented but not exposed as a public method.· the different implementations, which should be similar and easy, confuse the new developers who wants to make wrappers for their own programs but did not know how. So it is better to review bioperl-run and make the simple things as they should be.Temp file issues $runner->add_tmp_file($tmp_file); $runner->remove_tmp_files;UnimplementedSince it is an abstract module where there are methods to be implemented in the concrete modules· final_param· _find_files· _create_input_files· _parse_output_files Requirements: · Perl


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