Bio::Factory::SeqAnalysisParserFactoryI

Bio::Factory::SeqAnalysisParserFactoryI is a Perl interface describing objects capable of creating SeqAnalysisParserI parsers.
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  • License:
  • Perl Artistic License
  • Price:
  • FREE
  • Publisher Name:
  • Hilmar Lapp and Jason Stajich
  • Publisher web site:
  • http://search.cpan.org/~birney/bioperl-1.4/Bio/Factory/SeqAnalysisParserFactoryI.pm

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Bio::Factory::SeqAnalysisParserFactoryI Description

Bio::Factory::SeqAnalysisParserFactoryI is a Perl interface describing objects capable of creating SeqAnalysisParserI parsers. Bio::Factory::SeqAnalysisParserFactoryI is a Perl interface describing objects capable of creating SeqAnalysisParserI compliant parsers.SYNOPSIS # initialize an object implementing this interface, e.g. $factory = Bio::Factory::SeqAnalysisParserFactory->new(); # obtain a parser object $parser = $factory->get_parser(-input=>$inputobj, -params=>, -method => $method); # $parser is an object implementing Bio::SeqAnalysisParserI # annotate sequence with features produced by parser while(my $feat = $parser->next_feature()) { $seq->add_SeqFeature($feat); }This is an interface for factory classes capable of instantiating SeqAnalysisParserI implementing parsers.The concept behind the interface is a generic analysis result parsing in high-throughput automated sequence annotation pipelines. See Bio::SeqAnalysisParserI for more documentation of this concept.Requirements:· Perl


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