Bio::AlignIO::msf Bio::AlignIO::msf is a Perl module with msf sequence input/output stream.
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Perl module sequence input/output stream msf sequence msf

Bio::AlignIO::msf Description

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. Bio::AlignIO::msf is a Perl module with msf sequence input/output stream.SYNOPSISDo not use this module directly. Use it via the Bio::AlignIO class.This object can transform Bio::Align::AlignI objects to and from msf flat file databases.The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_alnTitle : next_alnUsage : $aln = $stream->next_aln()Function: returns the next alignment in the stream. Tries to read *all* MSF It reads all non whitespace characters in the alignment area. For MSFs with weird gaps (eg ~~~) map them by using $al->map_chars('~','-')Returns : L< Bio::Align::AlignI > objectArgs : NONEwrite_alnTitle : write_alnUsage : $stream->write_aln(@aln)Function: writes the $aln object into the stream in MSF format Sequence type of the alignment is determined by the first sequence.Returns : 1 for success and 0 for errorArgs : L< Bio::Align::AlignI > object Requirements: · Perl

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