AMEN AMEN is a unified suite of tools to manage, explore and combine biological multifaceted high-throughput data.
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mapping manage biological data explore biological data chromosomal location biologic chromosomal

AMEN Description

AMEN is a unified suite of tools to manage, explore and combine biological multifaceted high-throughput data. AMEN stands for Annotation, Mapping, Expression and Network and is a stand-alone, unified suite of tools to manage, explore and combine biological multifaceted high-throughput data such as annotation, chromosomal location, expression and interaction data. Requirements: · Tcl/Tk What's New in This Release: 7 modules: · Module to estimate if a biological entity (protein for exemple) interacts or regulates more genes/proteins in a cluster of genes as compared to whole genes (Enrichment on regulatory or interaction networks). Written by Aurélie Lardenois. · Module to visualize these enrichments as a network. Written by Aurélie Lardenois. · Two modules for semi-supervised k-means and PAM methods. · Module to add gene set files (.gmt files from GSEA) into the annotation file. · Module to normalize with positive or negative control genes. · Module to reorganize the samples into an expression file Two changes: · When importing group files they are now sorted in the alphabetical order and then imported into AMEN · The R packages installation module was modified.

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